I’m actually not in the support team; I pitch in on this forum when I can!
Is it always the same apps? It’s not unusual for apps to receive relatively frequent and ad-hoc updates, particularly the ones which come from Flathub (for which the update frequency is outside our control).
That said, just looking at the first item in the list, an update for Anki, this is a bit suspicious, since the Flathub package hasn’t been modified since March.
Jun 16 06:25:15 endless gnome-software[1059]: failed to call gs_plugin_refine_app on flatpak: failed to get permissions: Unable to load metadata from remote flathub: unknown error
I was about to say that this looks like a transient connection error, but if you’re getting this message a lot, something is more broken. I don’t think it’s (directly) related to your problem with Boxes.
If you see the same updates every time you launch the App Center, please try following the second set of instructions from this FAQ to get more detailed debugging output from it:
- Open Terminal
- Run
killall gnome-software
- Run
gnome-software --verbose > gnome-software-verbose.txt
– this will launch the app center and gather a lot of debug output to a text file
- Reproduce the problem in the app center – in your case, try doing this:
- Go to the Updates tab – from your description of the problem, I expect you’ll see the same set of updates again?
- Click Update All; wait for the updates to be installed
- Click the refresh button in the top-left corner of the app center – do all these phantom updates re-appear?
- Close the app center and return to the Terminal
- Press
Ctrl-C
- Send
gnome-software-verbose.txt
to us
@jrocha is the app center expert – perhaps he’ll be able to help with this extra information.
I appreciate that Boxes upstream didn’t get back to you, but I’m afraid there’s still not much help we can offer you with this, for the same reasons listed above. The only other suggestion I have is to close Boxes, then delete the folder .var/app/org.gnome.Boxes
in your home directory. You can do this from the file manager, or by copy-pasting this in a terminal (be careful to copy the whole command, to avoid accidentally wiping out data for other apps):
rm -r ~/.var/app/org.gnome.Boxes
This will erase all your VMs. On the basis that you said Boxes worked for a while but now crashes on launch, it’s possible some of its internal state has got messed up. If this does help, please pass this information on to the upstream bug.
If it doesn’t, run this in a terminal:
G_MESSAGES_DEBUG=all flatpak run org.gnome.Boxes >boxes.txt 2>&1
And then attach the boxes.txt
file here.
3.4.2 was released on Jun 11th. 3.4.3 was released 2 days later, on Jun 13th, with a single emergency bugfix. (I don’t know why the release notes have not been posted.) I don’t know why you would have seen either update twice, but your latest diagnostic shows you are running 3.4.3.